STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF78506.13-oxoacyl-[acyl-carrier protein] reductase. (249 aa)    
Predicted Functional Partners:
SHE35760.1
Amino acid adenylation domain-containing protein.
 
 0.813
fabZ
3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.
  
 0.741
SHE57012.1
Glutamate synthase (ferredoxin).
     
 0.689
SHF19168.1
Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.645
SHF62523.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.645
SHE32040.1
2-oxoisovalerate dehydrogenase E1 component.
   
 0.636
SHE94851.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
   
 0.636
SHF77948.1
FAD/FMN-containing dehydrogenase.
  
 0.624
SHF87418.1
[Acyl-carrier-protein] S-malonyltransferase.
 
  0.597
SHF56065.1
Amino acid transporter.
  
 
 0.574
Your Current Organism:
Aliifodinibius roseus
NCBI taxonomy Id: 1194090
Other names: A. roseus, ACCC 10715, Aliifodinibius roseus Wang et al. 2013, Bacteroidetes bacterium YIM D15, DSM 21986, KCTC 23442, YIM D15
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