STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF84315.1FecR family protein. (346 aa)    
Predicted Functional Partners:
SHE58182.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.780
SHE63798.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.714
SHF33896.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.634
SHE57812.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.615
SHF84281.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.602
SHF84352.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
   0.597
SHF84248.1
Starch-binding associating with outer membrane.
 
     0.590
SHE47856.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.540
SHG06655.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.503
SHE60837.1
Iron complex outermembrane recepter protein.
  
   0.497
Your Current Organism:
Aliifodinibius roseus
NCBI taxonomy Id: 1194090
Other names: A. roseus, ACCC 10715, Aliifodinibius roseus Wang et al. 2013, Bacteroidetes bacterium YIM D15, DSM 21986, KCTC 23442, YIM D15
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