STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG04672.1Methyltransferase, FkbM family. (2068 aa)    
Predicted Functional Partners:
SHG04594.1
WbqC-like protein family protein.
       0.757
SHG04635.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
       0.757
SHE40724.1
Tetratricopeptide repeat-containing protein.
 
  
  0.720
SHF56471.1
Sulfotransferase family protein.
  
  0.632
SHG04461.1
Sulfotransferase family protein.
       0.595
SHG04520.1
Sulfotransferase family protein.
       0.595
SHG04556.1
Hypothetical protein.
       0.595
SHE80814.1
Tetratricopeptide repeat-containing protein.
  
  0.557
SHF27631.1
Ankyrin repeat-containing protein.
  
 
   0.526
SHE34385.1
Leucine-rich repeat (LRR) protein.
  
     0.427
Your Current Organism:
Aliifodinibius roseus
NCBI taxonomy Id: 1194090
Other names: A. roseus, ACCC 10715, Aliifodinibius roseus Wang et al. 2013, Bacteroidetes bacterium YIM D15, DSM 21986, KCTC 23442, YIM D15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.