STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG27416.1phospholipid/cholesterol/gamma-HCH transport system permease protein. (245 aa)    
Predicted Functional Partners:
SHG27347.1
ABC-type transporter Mla maintaining outer membrane lipid asymmetry, component MlaD.
 
 0.999
SHG27376.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 0.999
SHG01891.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
   
  0.970
SHG03778.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
   
  0.970
SHG59829.1
Anti-anti-sigma factor.
   
  0.970
SHE72406.1
Lipopolysaccharide export system ATP-binding protein.
  
  0.733
SHG03603.1
iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
   
  0.728
SHE40302.1
Phospholipid transport system substrate-binding protein.
  
 
 0.719
SHF29529.1
Outer membrane transport energization protein ExbB.
  
     0.680
SHF04798.1
Lipopolysaccharide export system permease protein.
  
   
 0.641
Your Current Organism:
Aliifodinibius roseus
NCBI taxonomy Id: 1194090
Other names: A. roseus, ACCC 10715, Aliifodinibius roseus Wang et al. 2013, Bacteroidetes bacterium YIM D15, DSM 21986, KCTC 23442, YIM D15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.