STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG31120.1RNA polymerase sigma-70 factor, ECF subfamily. (419 aa)    
Predicted Functional Partners:
SHG31155.1
Uncharacterized conserved protein.
 
     0.878
SHG31272.1
DoxX-like family protein.
 
     0.544
SHG72975.1
Hypothetical protein.
 
     0.498
SHG16621.1
Dihydrofolate reductase.
  
     0.450
SHF81832.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
 
     0.444
SHE44870.1
HAD-superfamily class IIA hydrolase, TIGR01459.
  
     0.423
SHG01596.1
Methyltransferase domain-containing protein.
  
     0.422
SHE60949.1
HmuY protein.
  
     0.421
Your Current Organism:
Aliifodinibius roseus
NCBI taxonomy Id: 1194090
Other names: A. roseus, ACCC 10715, Aliifodinibius roseus Wang et al. 2013, Bacteroidetes bacterium YIM D15, DSM 21986, KCTC 23442, YIM D15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.