STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG61438.1Repeat domain-containing protein. (1240 aa)    
Predicted Functional Partners:
SHF85284.1
Starch-binding associating with outer membrane.
  
 
   0.708
SHF99110.1
Repeat domain-containing protein.
  
     0.699
SHG69460.1
Repeat domain-containing protein.
  
     0.661
SHF98662.1
Methylase of chemotaxis methyl-accepting proteins.
    
  0.619
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.605
SHG61480.1
FAD dependent oxidoreductase.
       0.601
SHF47559.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
  0.596
SHF77069.1
Methylase of chemotaxis methyl-accepting proteins.
    
  0.596
SHE32988.1
Protein of unknown function.
  
     0.587
SHG44034.1
Uncharacterized damage-inducible protein DinB (forms a four-helix bundle).
  
     0.531
Your Current Organism:
Aliifodinibius roseus
NCBI taxonomy Id: 1194090
Other names: A. roseus, ACCC 10715, Aliifodinibius roseus Wang et al. 2013, Bacteroidetes bacterium YIM D15, DSM 21986, KCTC 23442, YIM D15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.