STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTER_0356Transcriptional regulator, AraC family protein. (783 aa)    
Predicted Functional Partners:
CTER_3463
Hypothetical protein.
  
     0.763
CTER_4340
Hypothetical protein.
  
     0.763
CTER_3465
Hypothetical protein.
  
     0.762
CTER_4222
Hypothetical protein.
  
 
   0.762
CTER_2512
PFAM: Uncharacterized protein conserved in bacteria (DUF2334).
  
     0.761
CTER_3467
Hypothetical protein.
  
     0.761
CTER_2004
S-layer protein.
  
     0.760
CTER_4436
Hypothetical protein.
  
     0.760
CTER_2180
PFAM: Copper amine oxidase N-terminal domain.
  
     0.750
CTER_4447
PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.
    
  0.748
Your Current Organism:
Ruminiclostridium cellobioparum
NCBI taxonomy Id: 1195236
Other names: Clostridium termitidis CT1112, R. cellobioparum subsp. termitidis CT1112, Ruminiclostridium cellobioparum subsp. termitidis CT1112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.