STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTER_2818ABC-type sugar transport system, periplasmic component; PFAM: family. (623 aa)    
Predicted Functional Partners:
CTER_5270
PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Hpt domain.
  
 0.964
CTER_3382
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.
  
 0.958
CTER_2822
Ribose/xylose/arabinose/galactoside ABC transporter permease; PFAM: Branched-chain amino acid transport system / permease component; overlaps CDS with the same product name; overlaps CDS with the same product name.
 
 0.951
CTER_2823
Ribose/xylose/arabinose/galactoside ABC transporter permease; Overlaps CDS with the same product name; overlaps CDS with the same product name; Belongs to the binding-protein-dependent transport system permease family.
 
 0.951
CTER_2824
ABC-type sugar transport system, ATPase component; PFAM: ABC transporter.
 
 0.917
CTER_2320
PFAM: Response regulator receiver domain; FOG: CheY-like receiver.
   
 0.906
CTER_4229
Ribose/xylose/arabinose/galactoside ABC transporter permease; PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 0.849
CTER_1167
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box.
   
 0.827
CTER_0376
Ribose ABC transporter permease; PFAM: Branched-chain amino acid transport system / permease component; ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 0.820
CTER_0583
Ribose ABC transporter permease; PFAM: Branched-chain amino acid transport system / permease component; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 0.809
Your Current Organism:
Ruminiclostridium cellobioparum
NCBI taxonomy Id: 1195236
Other names: Clostridium termitidis CT1112, R. cellobioparum subsp. termitidis CT1112, Ruminiclostridium cellobioparum subsp. termitidis CT1112
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