STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTER_3208ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein. (467 aa)    
Predicted Functional Partners:
CTER_3210
ABC-type sugar transport systems, permease components.
 
  0.977
CTER_4040
ABC-type sugar transport systems, permease components.
 
  0.788
CTER_1046
ABC-type sugar transport systems, permease components.
 
  0.782
CTER_4895
ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.
  
     0.767
CTER_0407
ABC-type sugar transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component; overlaps CDS with the same product name.
 
  0.763
CTER_1193
ABC-type sugar transport systems, permease components.
 
  0.729
CTER_2232
ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.
  
     0.723
CTER_2854
ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component; ABC-type sugar transport systems, permease components.
 
  0.723
CTER_3209
ABC-type sugar transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  0.719
CTER_4031
ABC-type sugar transport systems, permease components.
 
  0.718
Your Current Organism:
Ruminiclostridium cellobioparum
NCBI taxonomy Id: 1195236
Other names: Clostridium termitidis CT1112, R. cellobioparum subsp. termitidis CT1112, Ruminiclostridium cellobioparum subsp. termitidis CT1112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.