STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTER_3550ABC-type sugar transport system, permease component. (277 aa)    
Predicted Functional Partners:
CTER_3549
ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component; ABC-type sugar transport systems, permease components.
  0.961
CTER_3556
ABC-type sugar transport system, permease component.
  
  
 
0.914
CTER_1259
ABC-type sugar transport systems, permease components.
 
  0.851
CTER_3057
ABC-type sugar transport systems, permease components.
  
  0.849
CTER_1088
ABC-type sugar transport systems, permease components.
 
  0.847
CTER_2073
ABC-type sugar transport systems, permease components.
 
  0.847
CTER_4758
ABC-type sugar transport systems, permease components.
 
  0.847
CTER_3372
PFAM: ABC transporter; TOBE domain; ABC-type sugar transport systems, ATPase components.
 0.846
CTER_1948
ABC-type sugar transport systems, permease components.
 
  0.845
CTER_4393
ABC-type sugar transport systems, permease components.
 
  0.842
Your Current Organism:
Ruminiclostridium cellobioparum
NCBI taxonomy Id: 1195236
Other names: Clostridium termitidis CT1112, R. cellobioparum subsp. termitidis CT1112, Ruminiclostridium cellobioparum subsp. termitidis CT1112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.