STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTER_5415Putative domain HDIG. (186 aa)    
Predicted Functional Partners:
lysS
Lysyl-tRNA synthetase (class II); PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial; Belongs to the class-II aminoacyl-tRNA synthetase family.
      0.902
CTER_4777
Putative domain HDIG; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG.
  
     0.626
CTER_5416
PFAM: Aminotransferase class I and II; Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities.
       0.554
CTER_5414
Fe-S oxidoreductase; PFAM: Radical SAM superfamily; B12 binding domain.
       0.471
Your Current Organism:
Ruminiclostridium cellobioparum
NCBI taxonomy Id: 1195236
Other names: Clostridium termitidis CT1112, R. cellobioparum subsp. termitidis CT1112, Ruminiclostridium cellobioparum subsp. termitidis CT1112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.