STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGRI_09090Hypothetical protein; COG2378 Predicted transcriptional regulator. (301 aa)    
Predicted Functional Partners:
AGRI_09085
Hypothetical protein.
       0.603
AGRI_09095
Filamentation induced by cAMP protein fic; Adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins.
       0.510
AGRI_04276
Na(+)-translocating NADH-quinone reductase subunit B.
  
     0.506
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.487
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.487
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.487
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.487
AGRI_11767
Peptidase S8/S53 subtilisin kexin sedolisin; COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family.
  
     0.482
AGRI_12321
Hypothetical protein; COG1396 Predicted transcriptional regulators.
  
     0.479
AGRI_03474
ABC-type amino acid transport/signal transduction systems, periplasmic component/domain-containing protein.
  
     0.450
Your Current Organism:
Alishewanella agri
NCBI taxonomy Id: 1195246
Other names: A. agri BL06, Alishewanella agri BL06, Alishewanella sp. BL06
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.