STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH34128.1TIGR02687 family protein. (843 aa)    
Predicted Functional Partners:
SHH34103.1
ATP-dependent Lon protease.
 
     0.950
SHH34204.1
Hypothetical protein.
 
     0.950
SHH34223.1
Protein of unknown function.
 
     0.950
SHH34149.1
N-6 DNA Methylase.
 
     0.947
SHH34242.1
Putative inner membrane protein.
       0.788
SHH85755.1
Molecular chaperone HtpG.
   
 0.717
SHH86035.1
Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family.
  
 
  0.679
SHH86051.1
Aspartate kinase.
  
 
  0.679
SHH33812.1
Hypothetical protein.
   
  0.562
fusA
Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...]
   
 0.546
Your Current Organism:
Wenyingzhuangia marina
NCBI taxonomy Id: 1195760
Other names: CGMCC 1.12162, DSM 100572, JCM 18494, Lutibacter sp. D1, W. marina, Wenyingzhuangia marina Liu et al. 2014, strain D1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.