STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH47020.1Hypothetical protein. (438 aa)    
Predicted Functional Partners:
SHH47002.1
Hypothetical protein.
 
   
 0.938
SHH47039.1
DNA repair protein RadC; Belongs to the UPF0758 family.
       0.797
SHH38476.1
Hypothetical protein.
  
     0.733
SHH38517.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.703
SHH90362.1
Protein of unknown function.
  
     0.700
SHH75968.1
Protein of unknown function.
  
     0.676
SHH89682.1
Hypothetical protein.
  
     0.659
SHH46507.1
Protein involved in gliding motility GldN.
  
     0.654
SHH37575.1
Hypothetical protein.
  
     0.625
SHH73655.1
Patatin-like phospholipase.
  
     0.591
Your Current Organism:
Wenyingzhuangia marina
NCBI taxonomy Id: 1195760
Other names: CGMCC 1.12162, DSM 100572, JCM 18494, Lutibacter sp. D1, W. marina, Wenyingzhuangia marina Liu et al. 2014, strain D1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.