STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH47083.1Trk system potassium uptake protein TrkH. (499 aa)    
Predicted Functional Partners:
SHH47066.1
Trk system potassium uptake protein TrkA.
 
 
 0.977
SHH81915.1
Sodium/proton antiporter, CPA1 family.
  
 
 0.796
SHH47002.1
Hypothetical protein.
       0.556
SHH47020.1
Hypothetical protein.
       0.556
SHH47039.1
DNA repair protein RadC; Belongs to the UPF0758 family.
       0.556
SHH60940.1
Trk system potassium uptake protein TrkA.
  
 
 0.498
SHH75505.1
Voltage-gated potassium channel.
  
 
 0.498
SHH79297.1
Voltage-gated potassium channel.
  
 
 0.498
Your Current Organism:
Wenyingzhuangia marina
NCBI taxonomy Id: 1195760
Other names: CGMCC 1.12162, DSM 100572, JCM 18494, Lutibacter sp. D1, W. marina, Wenyingzhuangia marina Liu et al. 2014, strain D1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.