STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH54065.1Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (519 aa)    
Predicted Functional Partners:
SHH54044.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
     0.975
SHH54136.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 43 family.
     0.975
SHH54176.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 43 family.
     0.973
SHH54240.1
Enterochelin esterase.
  
  0.909
SHH54013.1
Hypothetical protein.
 
     0.903
SHH54216.1
O-Glycosyl hydrolase; Belongs to the glycosyl hydrolase 30 family.
 
  0.867
SHH53979.1
alpha-L-fucosidase 2.
     0.855
SHH54448.1
Endo-1,4-beta-xylanase.
  
  0.845
SHH54083.1
Beta-glucosidase.
 
  
  0.842
SHH54287.1
Enterochelin esterase.
 
  
  0.755
Your Current Organism:
Wenyingzhuangia marina
NCBI taxonomy Id: 1195760
Other names: CGMCC 1.12162, DSM 100572, JCM 18494, Lutibacter sp. D1, W. marina, Wenyingzhuangia marina Liu et al. 2014, strain D1
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