SHH54947.1 protein (Wenyingzhuangia marina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHH54947.1

DNA-binding protein, histone-like, putative. (126 aa)

Predicted Functional Partners:

SHH39875.1

0.557

SHH65008.1

0.477

SHH37960.1

0.474

SHH46483.1

0.469

rpsT

0.445

polA

0.440

SHH64940.1

0.435

SHH43756.1

0.410

SHH81125.1

0.410

SHH86748.1

0.409

Your Current Organism:

Wenyingzhuangia marina

NCBI taxonomy Id: 1195760
Other names: CGMCC 1.12162, DSM 100572, JCM 18494, Lutibacter sp. D1, W. marina, Wenyingzhuangia marina Liu et al. 2014, strain D1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHH37960.1	SHH54947.1	SAMN05444281_0314	SAMN05444281_0881	Hypothetical protein.	DNA-binding protein, histone-like, putative.	0.474
SHH37960.1	SHH64940.1	SAMN05444281_0314	SAMN05444281_1401	Hypothetical protein.	Family of unknown function.	0.722
SHH39875.1	SHH43756.1	SAMN05444281_0404	SAMN05444281_0608	Protein involved in gliding motility SprE; Manually curated.	Protein involved in gliding motility SprA.	0.862
SHH39875.1	SHH46483.1	SAMN05444281_0404	SAMN05444281_0727	Protein involved in gliding motility SprE; Manually curated.	Protein involved in gliding motility GldM.	0.862
SHH39875.1	SHH54947.1	SAMN05444281_0404	SAMN05444281_0881	Protein involved in gliding motility SprE; Manually curated.	DNA-binding protein, histone-like, putative.	0.557
SHH39875.1	SHH64940.1	SAMN05444281_0404	SAMN05444281_1401	Protein involved in gliding motility SprE; Manually curated.	Family of unknown function.	0.739
SHH39875.1	SHH65008.1	SAMN05444281_0404	SAMN05444281_1405	Protein involved in gliding motility SprE; Manually curated.	Peptidase family C25.	0.495
SHH39875.1	SHH81125.1	SAMN05444281_0404	SAMN05444281_2112	Protein involved in gliding motility SprE; Manually curated.	BadF-type ATPase.	0.774
SHH39875.1	SHH86748.1	SAMN05444281_0404	SAMN05444281_2422	Protein involved in gliding motility SprE; Manually curated.	Hypothetical protein.	0.649
SHH43756.1	SHH39875.1	SAMN05444281_0608	SAMN05444281_0404	Protein involved in gliding motility SprA.	Protein involved in gliding motility SprE; Manually curated.	0.862
SHH43756.1	SHH46483.1	SAMN05444281_0608	SAMN05444281_0727	Protein involved in gliding motility SprA.	Protein involved in gliding motility GldM.	0.856
SHH43756.1	SHH54947.1	SAMN05444281_0608	SAMN05444281_0881	Protein involved in gliding motility SprA.	DNA-binding protein, histone-like, putative.	0.410
SHH43756.1	SHH65008.1	SAMN05444281_0608	SAMN05444281_1405	Protein involved in gliding motility SprA.	Peptidase family C25.	0.676
SHH43756.1	SHH81125.1	SAMN05444281_0608	SAMN05444281_2112	Protein involved in gliding motility SprA.	BadF-type ATPase.	0.763
SHH43756.1	SHH86748.1	SAMN05444281_0608	SAMN05444281_2422	Protein involved in gliding motility SprA.	Hypothetical protein.	0.420
SHH43756.1	polA	SAMN05444281_0608	SAMN05444281_1264	Protein involved in gliding motility SprA.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.657
SHH46483.1	SHH39875.1	SAMN05444281_0727	SAMN05444281_0404	Protein involved in gliding motility GldM.	Protein involved in gliding motility SprE; Manually curated.	0.862
SHH46483.1	SHH43756.1	SAMN05444281_0727	SAMN05444281_0608	Protein involved in gliding motility GldM.	Protein involved in gliding motility SprA.	0.856
SHH46483.1	SHH54947.1	SAMN05444281_0727	SAMN05444281_0881	Protein involved in gliding motility GldM.	DNA-binding protein, histone-like, putative.	0.469
SHH46483.1	SHH64940.1	SAMN05444281_0727	SAMN05444281_1401	Protein involved in gliding motility GldM.	Family of unknown function.	0.728