STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH56039.1DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains. (387 aa)    
Predicted Functional Partners:
SHH76410.1
PAS domain S-box-containing protein.
 
0.958
SHH72845.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
 
0.917
SHH34890.1
Hypothetical protein.
 0.875
SHH46060.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 0.848
SHH35475.1
RNA polymerase, sigma 54 subunit, RpoN/SigL.
 
  
 0.825
SHH88902.1
Hypothetical protein.
   
 0.787
SHH56065.1
ABC-2 type transport system permease protein.
       0.733
SHH56084.1
ABC-2 type transport system ATP-binding protein.
       0.731
SHH69256.1
Hypothetical protein.
   
0.698
SHH71686.1
Signal transduction histidine kinase.
   
0.698
Your Current Organism:
Wenyingzhuangia marina
NCBI taxonomy Id: 1195760
Other names: CGMCC 1.12162, DSM 100572, JCM 18494, Lutibacter sp. D1, W. marina, Wenyingzhuangia marina Liu et al. 2014, strain D1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.