STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH60483.1Carbohydrate family 9 binding domain-like. (356 aa)    
Predicted Functional Partners:
SHH60525.1
Glycosyl hydrolase-like 10.
     0.980
SHH60446.1
Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.900
SHH60470.1
Beta-1,4-mannooligosaccharide/beta-1, 4-mannosyl-N-acetylglucosamine phosphorylase.
 
     0.858
SHH88966.1
Prolyl oligopeptidase family protein.
 
     0.769
SHH60429.1
Alpha-1,2-mannosidase, putative.
 
     0.647
SHH60406.1
Histidine kinase.
 
     0.633
SHH60505.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
       0.610
SHH60627.1
Alpha-1,2-mannosidase, putative.
 
     0.587
SHH60608.1
alpha-L-fucosidase.
 
     0.576
SHH60581.1
Hexosaminidase.
 
     0.550
Your Current Organism:
Wenyingzhuangia marina
NCBI taxonomy Id: 1195760
Other names: CGMCC 1.12162, DSM 100572, JCM 18494, Lutibacter sp. D1, W. marina, Wenyingzhuangia marina Liu et al. 2014, strain D1
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