STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH61632.1Hypothetical protein. (219 aa)    
Predicted Functional Partners:
SHH34869.1
Hypothetical protein.
     
 0.577
SHH70197.1
CarboxypepD_reg-like domain-containing protein.
  
 
   0.561
SHH86494.1
Phosphoadenylylsulfate reductase (thioredoxin).
  
     0.544
SHH61613.1
Aspartate kinase; Belongs to the aspartokinase family.
       0.522
SHH61647.1
Hypothetical protein.
       0.501
SHH81291.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.481
SHH39935.1
Subtilase family protein.
    
  0.479
SHH82232.1
Putative beta-barrel porin-2, OmpL-like. bbp2.
  
     0.465
SHH80502.1
Tetratricopeptide repeat-containing protein.
  
     0.454
SHH80523.1
Tetratricopeptide repeat-containing protein.
  
     0.445
Your Current Organism:
Wenyingzhuangia marina
NCBI taxonomy Id: 1195760
Other names: CGMCC 1.12162, DSM 100572, JCM 18494, Lutibacter sp. D1, W. marina, Wenyingzhuangia marina Liu et al. 2014, strain D1
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