STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH62898.1FecR family protein. (375 aa)    
Predicted Functional Partners:
SHH73942.1
FecR family protein.
  
  
 
0.870
SHH62862.1
Starch-binding associating with outer membrane.
 
  
  0.676
SHH62916.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
  0.668
SHH62882.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.645
SHH73880.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
  0.611
SHH45738.1
Transcriptional regulator, GntR family.
  
     0.572
SHH58383.1
Iron complex outermembrane recepter protein.
 
 
 0.545
SHH42189.1
FecR family protein.
  
  
 
0.517
SHH73349.1
Iron complex outermembrane recepter protein.
  
 
 0.503
SHH55848.1
Transcriptional regulator, TetR family.
  
     0.476
Your Current Organism:
Wenyingzhuangia marina
NCBI taxonomy Id: 1195760
Other names: CGMCC 1.12162, DSM 100572, JCM 18494, Lutibacter sp. D1, W. marina, Wenyingzhuangia marina Liu et al. 2014, strain D1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.