STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH63778.1TspO and MBR related proteins. (152 aa)    
Predicted Functional Partners:
SHH63760.1
Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family.
       0.697
SHH63568.1
Deoxyribodipyrimidine photo-lyase family protein (cryptochrome).
 
  
 0.672
SHH63704.1
ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain.
       0.657
SHH63724.1
Multidrug resistance efflux pump.
       0.657
SHH63744.1
Outer membrane protein TolC.
       0.657
SHH63127.1
Lycopene cyclase domain-containing protein.
      0.628
SHH92911.1
Proline racemase; Belongs to the proline racemase family.
   
    0.588
SHH63051.1
Phytoene desaturase.
 
  
 0.435
SHH63530.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
 
     0.427
SHH63151.1
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
  
  
 0.420
Your Current Organism:
Wenyingzhuangia marina
NCBI taxonomy Id: 1195760
Other names: CGMCC 1.12162, DSM 100572, JCM 18494, Lutibacter sp. D1, W. marina, Wenyingzhuangia marina Liu et al. 2014, strain D1
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