STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH63920.1Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family. (190 aa)    
Predicted Functional Partners:
SHH63902.1
Hypothetical protein.
 
     0.950
SHH63879.1
Hypothetical protein.
 
     0.895
SHH63942.1
23S rRNA (adenine1618-N6)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA.
       0.510
SHH75704.1
SatD family (SatD).
  
     0.506
SHH75724.1
Protein of unknown function.
  
     0.468
SHH75856.1
Hypothetical protein.
  
     0.422
SHH69641.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.412
Your Current Organism:
Wenyingzhuangia marina
NCBI taxonomy Id: 1195760
Other names: CGMCC 1.12162, DSM 100572, JCM 18494, Lutibacter sp. D1, W. marina, Wenyingzhuangia marina Liu et al. 2014, strain D1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.