STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH69556.1PepSY-associated TM region. (512 aa)    
Predicted Functional Partners:
SHH69600.1
Iron complex outermembrane recepter protein.
 
  
 0.821
SHH69572.1
Hypothetical protein.
       0.788
SHH69585.1
Hypothetical protein.
       0.773
SHH86531.1
Sulfite reductase (ferredoxin).
     
 0.637
SHH81572.1
Glycosyl hydrolases family 43.
  
     0.546
SHH61770.1
Signal transduction histidine kinase.
  
     0.500
SHH45907.1
Sulfite reductase (NADPH) flavoprotein alpha-component.
  
  
  0.486
SHH62010.1
Signal transduction histidine kinase.
  
     0.453
SHH61947.1
Starch-binding associating with outer membrane.
  
     0.449
SHH45951.1
Ankyrin repeat.
 
  
  0.431
Your Current Organism:
Wenyingzhuangia marina
NCBI taxonomy Id: 1195760
Other names: CGMCC 1.12162, DSM 100572, JCM 18494, Lutibacter sp. D1, W. marina, Wenyingzhuangia marina Liu et al. 2014, strain D1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.