STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH78929.1Protein of unknown function. (572 aa)    
Predicted Functional Partners:
SHH34596.1
Surface antigen.
  
 
   0.751
SHH87576.1
Hypothetical protein.
  
     0.745
SHH45405.1
PD-(D/E)XK nuclease superfamily protein.
  
     0.702
SHH46457.1
Protein involved in gliding motility GldL.
  
     0.675
SHH37394.1
Cell division protein FtsQ.
  
 
 
 0.661
lpxK
lipid-A-disaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
      0.658
SHH78922.1
Hypothetical protein.
       0.634
SHH35871.1
Conserved hypothetical protein 95.
  
     0.612
SHH31437.1
O-succinylbenzoic acid--CoA ligase.
  
  
  0.594
SHH89089.1
O-succinylbenzoate synthase.
  
     0.593
Your Current Organism:
Wenyingzhuangia marina
NCBI taxonomy Id: 1195760
Other names: CGMCC 1.12162, DSM 100572, JCM 18494, Lutibacter sp. D1, W. marina, Wenyingzhuangia marina Liu et al. 2014, strain D1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.