STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH82087.1Agmatinase; Belongs to the arginase family. (310 aa)    
Predicted Functional Partners:
SHH82102.1
Arginine decarboxylase.
 
 
 0.987
SHH59225.1
Glutamate synthase (NADH) large subunit.
     
 0.889
SHH60214.1
N-carbamoylputrescine amidase.
  
 0.840
SHH60192.1
Agmatine/peptidylarginine deiminase; Belongs to the agmatine deiminase family.
     
 0.837
SHH85985.1
L-proline dehydrogenase.
  
 0.786
SHH36849.1
Acetylornithine deacetylase.
     
 0.782
argH
Argininosuccinate lyase.
     
 0.756
SHH82080.1
Hypothetical protein.
 
     0.710
SHH80045.1
Acetylornithine/succinyldiaminopimelate/putresci ne aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.574
SHH36955.1
Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.505
Your Current Organism:
Wenyingzhuangia marina
NCBI taxonomy Id: 1195760
Other names: CGMCC 1.12162, DSM 100572, JCM 18494, Lutibacter sp. D1, W. marina, Wenyingzhuangia marina Liu et al. 2014, strain D1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.