STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH85608.1Putative porin. (653 aa)    
Predicted Functional Partners:
SHH64940.1
Family of unknown function.
  
     0.754
SHH93765.1
Outer membrane transport energization protein TonB.
  
 
   0.741
SHH86930.1
Hypothetical protein.
  
     0.723
SHH40236.1
Hypothetical protein.
  
     0.720
SHH73273.1
Protein involved in gliding motility GldI.
  
     0.714
SHH81433.1
Hypothetical protein.
  
     0.709
SHH70197.1
CarboxypepD_reg-like domain-containing protein.
  
     0.699
SHH46483.1
Protein involved in gliding motility GldM.
  
     0.683
SHH34596.1
Surface antigen.
  
     0.679
SHH35435.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.669
Your Current Organism:
Wenyingzhuangia marina
NCBI taxonomy Id: 1195760
Other names: CGMCC 1.12162, DSM 100572, JCM 18494, Lutibacter sp. D1, W. marina, Wenyingzhuangia marina Liu et al. 2014, strain D1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.