STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH86147.1Phage shock protein C (PspC) family protein. (583 aa)    
Predicted Functional Partners:
SHH86133.1
Transcriptional regulator, PadR family.
     0.938
SHH86110.1
Hypothetical protein.
 
    0.817
SHH71982.1
Putative membrane protein.
  
    0.758
SHH81139.1
Hypothetical protein.
  
     0.653
SHH71998.1
Do/DeqQ family serine protease.
  
  
 0.570
SHH86652.1
Methyltransferase domain-containing protein.
  
     0.518
SHH79260.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
   
   0.514
SHH36482.1
Hypothetical protein.
  
     0.511
SHH31626.1
HAMP domain-containing protein.
  
    0.510
SHH39384.1
Signal transduction histidine kinase.
  
    0.510
Your Current Organism:
Wenyingzhuangia marina
NCBI taxonomy Id: 1195760
Other names: CGMCC 1.12162, DSM 100572, JCM 18494, Lutibacter sp. D1, W. marina, Wenyingzhuangia marina Liu et al. 2014, strain D1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.