STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH90099.14-hydroxybenzoate polyprenyltransferase. (304 aa)    
Predicted Functional Partners:
SHH90115.1
Mevalonate kinase.
 
   
 0.831
SHH78685.1
Putative glycerol-1-phosphate prenyltransferase.
 
  
 0.810
SHH73273.1
Protein involved in gliding motility GldI.
  
     0.719
SHH39875.1
Protein involved in gliding motility SprE; Manually curated.
  
     0.702
SHH37575.1
Hypothetical protein.
  
     0.686
SHH70511.1
Threonine/homoserine/homoserine lactone efflux protein.
  
     0.683
SHH90087.1
Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family.
       0.662
SHH41522.1
Hypothetical protein.
  
     0.658
SHH70197.1
CarboxypepD_reg-like domain-containing protein.
  
     0.652
SHH40624.1
Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.650
Your Current Organism:
Wenyingzhuangia marina
NCBI taxonomy Id: 1195760
Other names: CGMCC 1.12162, DSM 100572, JCM 18494, Lutibacter sp. D1, W. marina, Wenyingzhuangia marina Liu et al. 2014, strain D1
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