STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHN27417.1Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone. (216 aa)    
Predicted Functional Partners:
AHN28189.1
Cytochrome O ubiquinol oxidase subunit II.
  
 
 0.856
AHN28357.1
Thioredoxin-related protein.
 
 
 0.840
AHN28496.1
Copper metallochaperone, Cox17-like protein.
 
   
 0.794
ctaB
Heme O synthase, protoheme IX farnesyltransferase COX10-CtaB; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
  
 0.642
hisG
ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily.
       0.576
AHN27415.1
Hypothetical protein.
       0.470
AHN28188.1
Cytochrome O ubiquinol oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.408
AHN28270.1
CDP-6-deoxy-delta-3,4-glucoseen reductase-like.
   
  
 0.406
Your Current Organism:
Snodgrassella alvi wkB2
NCBI taxonomy Id: 1196094
Other names: Candidatus Snodgrassella alvi wkB2, S. alvi wkB2
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