STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHN28008.1Transcriptional regulator, TetR family. (190 aa)    
Predicted Functional Partners:
AHN28007.1
Saccharopine dehydrogenase.
 
     0.893
AHN29436.1
Hypothetical protein.
  
     0.763
AHN29298.1
Hypothetical protein.
  
     0.760
AHN27467.1
Hypothetical protein.
  
     0.740
AHN28914.1
Transcriptional regulator, TetR family.
  
     0.730
AHN28527.1
Hypothetical protein.
  
     0.711
AHN28915.1
ABC transporter related.
  
     0.648
AHN28916.1
YbtP.
  
     0.643
AHN29633.1
Leucine-rich repeat protein.
  
     0.563
AHN27451.1
Chorismate mutase.
  
    0.558
Your Current Organism:
Snodgrassella alvi wkB2
NCBI taxonomy Id: 1196094
Other names: Candidatus Snodgrassella alvi wkB2, S. alvi wkB2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.