AHN28140.1 protein (Snodgrassella alvi wkB2)

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Score

AHN28140.1

ABC transporter ATP-binding protein uup. (542 aa)

Predicted Functional Partners:

rpmI

0.647

rplD

0.635

rplU

0.634

rpsO

0.629

rpsC

0.628

rplM

0.626

rplC

0.620

AHN28141.1

0.615

rplR

0.615

rpmD

0.612

Your Current Organism:

Snodgrassella alvi wkB2

NCBI taxonomy Id: 1196094
Other names: Candidatus Snodgrassella alvi wkB2, S. alvi wkB2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHN28140.1	AHN28141.1	SALWKB2_0758	SALWKB2_0759	ABC transporter ATP-binding protein uup.	Phosphinothricin N-acetyltransferase.	0.615
AHN28140.1	rplC	SALWKB2_0758	SALWKB2_2169	ABC transporter ATP-binding protein uup.	LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.620
AHN28140.1	rplD	SALWKB2_0758	SALWKB2_2168	ABC transporter ATP-binding protein uup.	LSU ribosomal protein L4p (L1e); Forms part of the polypeptide exit tunnel.	0.635
AHN28140.1	rplM	SALWKB2_0758	SALWKB2_0287	ABC transporter ATP-binding protein uup.	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.626
AHN28140.1	rplR	SALWKB2_0758	SALWKB2_2153	ABC transporter ATP-binding protein uup.	LSU ribosomal protein L18p (L5e); This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.615
AHN28140.1	rplU	SALWKB2_0758	SALWKB2_1696	ABC transporter ATP-binding protein uup.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.634
AHN28140.1	rpmD	SALWKB2_0758	SALWKB2_2151	ABC transporter ATP-binding protein uup.	LSU ribosomal protein L30p (L7e).	0.612
AHN28140.1	rpmI	SALWKB2_0758	SALWKB2_0928	ABC transporter ATP-binding protein uup.	LSU ribosomal protein L35p; Belongs to the bacterial ribosomal protein bL35 family.	0.647
AHN28140.1	rpsC	SALWKB2_0758	SALWKB2_2163	ABC transporter ATP-binding protein uup.	SSU ribosomal protein S3p (S3e); Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.628
AHN28140.1	rpsO	SALWKB2_0758	SALWKB2_0680	ABC transporter ATP-binding protein uup.	SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.629
AHN28141.1	AHN28140.1	SALWKB2_0759	SALWKB2_0758	Phosphinothricin N-acetyltransferase.	ABC transporter ATP-binding protein uup.	0.615
rplC	AHN28140.1	SALWKB2_2169	SALWKB2_0758	LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	ABC transporter ATP-binding protein uup.	0.620
rplC	rplD	SALWKB2_2169	SALWKB2_2168	LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L4p (L1e); Forms part of the polypeptide exit tunnel.	0.999
rplC	rplM	SALWKB2_2169	SALWKB2_0287	LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.998
rplC	rplR	SALWKB2_2169	SALWKB2_2153	LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L18p (L5e); This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
rplC	rplU	SALWKB2_2169	SALWKB2_1696	LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.993
rplC	rpmD	SALWKB2_2169	SALWKB2_2151	LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L30p (L7e).	0.999
rplC	rpmI	SALWKB2_2169	SALWKB2_0928	LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L35p; Belongs to the bacterial ribosomal protein bL35 family.	0.991
rplC	rpsC	SALWKB2_2169	SALWKB2_2163	LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	SSU ribosomal protein S3p (S3e); Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplC	rpsO	SALWKB2_2169	SALWKB2_0680	LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.993