Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AHN27650.1 | AHN29017.1 | SALWKB2_0268 | SALWKB2_1635 | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | NAD(P)HX epimerase / NAD(P)HX dehydratase. | 0.876 |
| AHN27650.1 | rph | SALWKB2_0268 | SALWKB2_1347 | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.585 |
| AHN27650.1 | rppH | SALWKB2_0268 | SALWKB2_0860 | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.498 |
| AHN27839.1 | rppH | SALWKB2_0457 | SALWKB2_0860 | Putative deoxyribonuclease YcfH. | Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.549 |
| AHN28245.1 | AHN29017.1 | SALWKB2_0863 | SALWKB2_1635 | ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | NAD(P)HX epimerase / NAD(P)HX dehydratase. | 0.876 |
| AHN28245.1 | rph | SALWKB2_0863 | SALWKB2_1347 | ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.585 |
| AHN28245.1 | rppH | SALWKB2_0863 | SALWKB2_0860 | ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.498 |
| AHN28430.1 | rnr | SALWKB2_1048 | SALWKB2_1011 | Carboxyl-terminal protease; Belongs to the peptidase S41A family. | 3'-to-5' exoribonuclease RNase R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.409 |
| AHN28430.1 | rppH | SALWKB2_1048 | SALWKB2_0860 | Carboxyl-terminal protease; Belongs to the peptidase S41A family. | Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.706 |
| AHN29017.1 | AHN27650.1 | SALWKB2_1635 | SALWKB2_0268 | NAD(P)HX epimerase / NAD(P)HX dehydratase. | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | 0.876 |
| AHN29017.1 | AHN28245.1 | SALWKB2_1635 | SALWKB2_0863 | NAD(P)HX epimerase / NAD(P)HX dehydratase. | ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | 0.876 |
| AHN29017.1 | rppH | SALWKB2_1635 | SALWKB2_0860 | NAD(P)HX epimerase / NAD(P)HX dehydratase. | Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.767 |
| AHN29670.1 | rph | SALWKB2_2288 | SALWKB2_1347 | Exoribonuclease II. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.911 |
| AHN29670.1 | rppH | SALWKB2_2288 | SALWKB2_0860 | Exoribonuclease II. | Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.457 |
| dapF | rppH | SALWKB2_1380 | SALWKB2_0860 | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.760 |
| parE | rppH | SALWKB2_0859 | SALWKB2_0860 | Topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. | Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.519 |
| rnr | AHN28430.1 | SALWKB2_1011 | SALWKB2_1048 | 3'-to-5' exoribonuclease RNase R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | Carboxyl-terminal protease; Belongs to the peptidase S41A family. | 0.409 |
| rnr | rph | SALWKB2_1011 | SALWKB2_1347 | 3'-to-5' exoribonuclease RNase R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.926 |
| rnr | rppH | SALWKB2_1011 | SALWKB2_0860 | 3'-to-5' exoribonuclease RNase R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.568 |
| rph | AHN27650.1 | SALWKB2_1347 | SALWKB2_0268 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | 0.585 |
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