STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHN28658.1Aconitate hydratase 2; Belongs to the aconitase/IPM isomerase family. (861 aa)    
Predicted Functional Partners:
AHN28676.1
Citrate synthase (si); Belongs to the citrate synthase family.
  
 
 0.979
AHN28534.1
Isocitrate dehydrogenase [NADP].
  
 
 0.975
AHN28675.1
2-oxoglutarate dehydrogenase E1 component.
   
  
 0.787
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
  
 0.706
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate.
  
  
 0.702
AHN28171.1
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex.
   
  
 0.646
AHN28252.1
Fumarate reductase flavoprotein subunit.
   
  
 0.549
AHN28681.1
Succinate dehydrogenase cytochrome b-556 subunit.
  
  
 0.545
AHN28657.1
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
  
 0.495
AHN28130.1
NADP-dependent malic enzyme.
  
  
 0.484
Your Current Organism:
Snodgrassella alvi wkB2
NCBI taxonomy Id: 1196094
Other names: Candidatus Snodgrassella alvi wkB2, S. alvi wkB2
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