STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHN28906.1Putative lipoprotein. (118 aa)    
Predicted Functional Partners:
AHN28907.1
Lipoprotein, putative.
 
    0.980
AHN28905.1
Putative lipoprotein.
 
    0.965
AHN29301.1
Hemagglutinin/hemolysin-related protein.
  
     0.548
AHN27874.1
Phage protein.
  
     0.517
AHN29302.1
Channel-forming transporter/cytolysins activator of TpsB family.
  
     0.498
AHN27896.1
Hypothetical protein.
  
     0.462
AHN28903.1
23S rRNA (guanine-N-2-) -methyltransferase rlmL; Belongs to the methyltransferase superfamily.
       0.457
AHN28904.1
tRNA pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family.
       0.457
Your Current Organism:
Snodgrassella alvi wkB2
NCBI taxonomy Id: 1196094
Other names: Candidatus Snodgrassella alvi wkB2, S. alvi wkB2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.