STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHN29573.1Hypothetical protein. (230 aa)    
Predicted Functional Partners:
AHN29631.1
Hypothetical protein.
  
     0.584
AHN28881.1
UPF0141 protein yjgX precursor.
  
     0.570
AHN29298.1
Hypothetical protein.
  
     0.537
AHN29632.1
Leucine-rich repeat protein.
  
     0.533
AHN29633.1
Leucine-rich repeat protein.
  
     0.521
AHN28463.1
Type IV fimbrial biogenesis protein PilX.
  
     0.515
AHN29501.1
Hypothetical protein.
  
     0.503
AHN29629.1
Hypothetical protein.
  
     0.498
AHN29602.1
Regulator of pectin lyase production.
  
     0.450
AHN28316.1
Putative phage repressor.
  
     0.449
Your Current Organism:
Snodgrassella alvi wkB2
NCBI taxonomy Id: 1196094
Other names: Candidatus Snodgrassella alvi wkB2, S. alvi wkB2
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