STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHN24583.1Hypothetical protein. (522 aa)    
Predicted Functional Partners:
AHN25471.1
LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B).
   
 
 0.761
AHN25125.1
LptA, protein essential for LPS transport across the periplasm.
  
 
 0.647
AHN24584.1
Pectin acetylesterase.
       0.625
AHN24585.1
Pectate lyase precursor.
       0.576
AHN24586.1
Exopolygalacturonate lyase.
     
 0.524
AHN24582.1
Putative transport protein.
     
 0.423
Your Current Organism:
Gilliamella apicola
NCBI taxonomy Id: 1196095
Other names: ATCC BAA-2448, Candidatus Gilliamella apicola, G. apicola, Gilliamella apicola Kwong and Moran 2013, NCIMB 14804, strain wkB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.