STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHN24767.1Hypothetical UPF0194 membrane protein ybhG. (376 aa)    
Predicted Functional Partners:
AHN24766.1
ABC-type multidrug transport system, permease component.
 
  
 0.930
macB
Macrolide export ATP-binding/permease protein MacB; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.795
AHN24768.1
Transcriptional regulator, MarR family.
 
  
 0.676
AHN26672.1
Type I secretion outer membrane protein, TolC precursor.
  
 
 0.673
AHN27332.1
ABC-type multidrug transport system, permease component.
 
  
 0.647
AHN26483.1
RND efflux system, inner membrane transporter CmeB.
 
   
 0.597
AHN26484.1
RND efflux system, membrane fusion protein CmeA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.583
AHN27333.1
ABC-type multidrug transport system, permease component.
 
  
 0.575
AHN26872.1
Putative secretion ATPase.
  
 
 0.521
AHN25924.1
ABC-type multidrug transport system, permease component.
 
  
 0.494
Your Current Organism:
Gilliamella apicola
NCBI taxonomy Id: 1196095
Other names: ATCC BAA-2448, Candidatus Gilliamella apicola, G. apicola, Gilliamella apicola Kwong and Moran 2013, NCIMB 14804, strain wkB1
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