STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHN27056.1Hypothetical protein; Belongs to the DapA family. (313 aa)    
Predicted Functional Partners:
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
  
 0.880
AHN27057.1
Altronate hydrolase.
     
 0.787
citF
Citrate lyase alpha chain.
   
    0.762
lysA
Diaminopimelate decarboxylase.
  
 0.744
AHN26769.1
Holo-citrate lyase synthase.
   
    0.692
fucP
Fucose/glucose/galactose permease.
  
  
 0.689
pheA
Chorismate mutase I / Prephenate dehydratase.
  
  
 0.634
AHN27058.1
Putative glucarate transporter.
  
  
 0.623
tyrA
Chorismate mutase I / Cyclohexadienyl dehydrogenase.
  
  
 0.605
AHN25045.1
Aspartokinase / Homoserine dehydrogenase; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
  
 0.595
Your Current Organism:
Gilliamella apicola
NCBI taxonomy Id: 1196095
Other names: ATCC BAA-2448, Candidatus Gilliamella apicola, G. apicola, Gilliamella apicola Kwong and Moran 2013, NCIMB 14804, strain wkB1
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