STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHN27066.1Aspartate aminotransferase. (391 aa)    
Predicted Functional Partners:
tyrA
Chorismate mutase I / Cyclohexadienyl dehydrogenase.
    
 0.944
pheA
Chorismate mutase I / Prephenate dehydratase.
    
 0.944
argA
N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.
  
  
 0.941
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate.
   
 0.927
AHN24980.1
Glutamate synthase [NADPH] large chain.
    
 0.919
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
 0.915
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
   
 
 0.915
cysK
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
   
 0.913
AHN24949.1
Aspartate aminotransferase.
   
 0.912
AHN25181.1
L-aspartate-beta-decarboxylase.
   
 0.912
Your Current Organism:
Gilliamella apicola
NCBI taxonomy Id: 1196095
Other names: ATCC BAA-2448, Candidatus Gilliamella apicola, G. apicola, Gilliamella apicola Kwong and Moran 2013, NCIMB 14804, strain wkB1
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