STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC27725.1Hypothetical protein. (413 aa)    
Predicted Functional Partners:
SFC27817.1
Accessory gene regulator B.
    
  0.879
SFC27752.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
    
 
0.854
SFC48385.1
PAS domain S-box-containing protein.
  
 
 0.829
SFC28191.1
Two-component system, chemotaxis family, response regulator CheV.
     
 0.755
SFC88747.1
ABC-2 type transport system ATP-binding protein.
    
 0.547
SFD02799.1
Two-component system, LytT family, response regulator LytT.
    
 0.547
SFC56028.1
Signal transduction histidine kinase.
     
 0.424
SFD02842.1
Accessory gene regulator B.
    
  0.420
SFC27787.1
Hypothetical protein.
       0.404
SFD13364.1
Chemotaxis phosphatase CheX.
     
 0.403
Your Current Organism:
Clostridium uliginosum
NCBI taxonomy Id: 119641
Other names: ATCC BAA-53, C. uliginosum, Clostridium uliginosum Matthies et al. 2001, DSM 12992, strain CK55
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.