STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC62837.1Sporulation protein YqfC. (92 aa)    
Predicted Functional Partners:
SFC62864.1
Similar to stage IV sporulation protein.
 
  
 0.994
SFC23363.1
Stage II sporulation protein M.
  
   
 0.818
SFC96657.1
Stage III sporulation protein AD.
  
  
 0.801
SFC62894.1
Hypothetical protein.
       0.745
SFC72838.1
Sporulation integral membrane protein YlbJ.
 
   
 0.744
SFC96683.1
Stage III sporulation protein AE.
  
  
 0.730
SFC96730.1
Stage III sporulation protein AG.
  
  
 0.704
SFC96583.1
Stage III sporulation protein AA.
  
   
 0.676
SFC96607.1
Stage III sporulation protein AB.
  
  
 0.675
SFC66747.1
Stage II sporulation protein E.
  
     0.673
Your Current Organism:
Clostridium uliginosum
NCBI taxonomy Id: 119641
Other names: ATCC BAA-53, C. uliginosum, Clostridium uliginosum Matthies et al. 2001, DSM 12992, strain CK55
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.