STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC62864.1Similar to stage IV sporulation protein. (376 aa)    
Predicted Functional Partners:
SFC62837.1
Sporulation protein YqfC.
 
  
 0.994
SFC62357.1
Stage II sporulation protein P.
  
   
 0.839
SFC32728.1
Putative DeoR family transcriptional regulator, stage III sporulation protein D.
  
   
 0.815
SFC72838.1
Sporulation integral membrane protein YlbJ.
 
   
 0.804
SFC33627.1
Stage II sporulation protein R.
  
  
 0.797
SFC96583.1
Stage III sporulation protein AA.
  
  
 0.783
SFC71787.1
Stage II sporulation protein GA (sporulation sigma-E factor processing peptidase); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.775
SFC96683.1
Stage III sporulation protein AE.
  
     0.774
SFC66747.1
Stage II sporulation protein E.
  
     0.772
SFC66922.1
Sporulation protein YabP.
 
   
 0.771
Your Current Organism:
Clostridium uliginosum
NCBI taxonomy Id: 119641
Other names: ATCC BAA-53, C. uliginosum, Clostridium uliginosum Matthies et al. 2001, DSM 12992, strain CK55
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.