STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD02799.1Two-component system, LytT family, response regulator LytT. (252 aa)    
Predicted Functional Partners:
SFD02818.1
Two-component system, AgrA family, sensor histidine kinase AgrC.
  
 
 0.942
SFC30960.1
Two-component system, sensor histidine kinase YesM.
 
 
 0.872
SFC91066.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 0.831
SFD40926.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 0.825
SFC55647.1
Signal transduction histidine kinase.
    
 0.761
SFC27752.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 
 0.653
proA
Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.
    
   0.646
SFC27725.1
Hypothetical protein.
    
 0.547
SFC60032.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
    0.543
SFC48385.1
PAS domain S-box-containing protein.
    
 0.501
Your Current Organism:
Clostridium uliginosum
NCBI taxonomy Id: 119641
Other names: ATCC BAA-53, C. uliginosum, Clostridium uliginosum Matthies et al. 2001, DSM 12992, strain CK55
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.