STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD09174.1Type IV pilus assembly protein PilO. (438 aa)    
Predicted Functional Partners:
SFD09198.1
Type IV pilus assembly protein PilN.
 
 
 0.998
SFD09226.1
Type IV pilus assembly protein PilM.
 
 
 0.985
SFD09059.1
Von Willebrand factor type A domain-containing protein.
 
     0.887
SFD09272.1
Type IV pilus assembly protein PilC.
 
 
 
 0.851
SFD09302.1
Type IV pilus assembly protein PilB.
  
 
 0.814
SFC63571.1
LysM domain-containing protein.
   
   0.779
SFC96316.1
Type IV pilus assembly protein PilB.
  
 
 0.772
SFC96347.1
Type IV pilus assembly protein PilC.
   
 
 0.767
SFC85252.1
3D (Asp-Asp-Asp) domain-containing protein.
  
     0.743
SFC85908.1
O-Antigen ligase.
 
   
 0.725
Your Current Organism:
Clostridium uliginosum
NCBI taxonomy Id: 119641
Other names: ATCC BAA-53, C. uliginosum, Clostridium uliginosum Matthies et al. 2001, DSM 12992, strain CK55
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.