Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFC19508.1 | SFD22335.1 | SAMN05421842_101196 | SAMN05421842_12540 | Exodeoxyribonuclease-3. | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.732 |
SFC29073.1 | SFD22335.1 | SAMN05421842_10259 | SAMN05421842_12540 | Dynamin family protein. | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.488 |
SFC29073.1 | cmk | SAMN05421842_10259 | SAMN05421842_101119 | Dynamin family protein. | Cytidylate kinase. | 0.578 |
SFC29073.1 | ispH | SAMN05421842_10259 | SAMN05421842_101120 | Dynamin family protein. | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.806 |
SFC29073.1 | scpB | SAMN05421842_10259 | SAMN05421842_101307 | Dynamin family protein. | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.554 |
SFC96189.1 | SFD22335.1 | SAMN05421842_11522 | SAMN05421842_12540 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.439 |
SFC96189.1 | der | SAMN05421842_11522 | SAMN05421842_10838 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.590 |
SFD22307.1 | SFD22335.1 | SAMN05421842_12539 | SAMN05421842_12540 | 23S rRNA (uracil1939-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.579 |
SFD22307.1 | ispH | SAMN05421842_12539 | SAMN05421842_101120 | 23S rRNA (uracil1939-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.688 |
SFD22335.1 | SFC19508.1 | SAMN05421842_12540 | SAMN05421842_101196 | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | Exodeoxyribonuclease-3. | 0.732 |
SFD22335.1 | SFC29073.1 | SAMN05421842_12540 | SAMN05421842_10259 | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | Dynamin family protein. | 0.488 |
SFD22335.1 | SFC96189.1 | SAMN05421842_12540 | SAMN05421842_11522 | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.439 |
SFD22335.1 | SFD22307.1 | SAMN05421842_12540 | SAMN05421842_12539 | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | 23S rRNA (uracil1939-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.579 |
SFD22335.1 | SFD45040.1 | SAMN05421842_12540 | SAMN05421842_1516 | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | [FeFe] hydrogenase H-cluster maturation GTPase HydF. | 0.488 |
SFD22335.1 | cmk | SAMN05421842_12540 | SAMN05421842_101119 | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | Cytidylate kinase. | 0.652 |
SFD22335.1 | der | SAMN05421842_12540 | SAMN05421842_10838 | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.782 |
SFD22335.1 | ispH | SAMN05421842_12540 | SAMN05421842_101120 | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.751 |
SFD22335.1 | scpB | SAMN05421842_12540 | SAMN05421842_101307 | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.665 |
SFD22335.1 | truB | SAMN05421842_12540 | SAMN05421842_108113 | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | tRNA pseudouridine55 synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.459 |
SFD45040.1 | SFD22335.1 | SAMN05421842_1516 | SAMN05421842_12540 | [FeFe] hydrogenase H-cluster maturation GTPase HydF. | 16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.488 |
page 1 of 3