STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD32185.1DNA transformation protein. (87 aa)    
Predicted Functional Partners:
SFD32160.1
Hypothetical protein.
 
     0.832
cobB
NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
   
   0.735
SFC85606.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
    0.649
SFD09513.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
     0.624
SFD32211.1
Uncharacterized protein, pyridoxamine 5'-phosphate oxidase (PNPOx-like) family.
       0.615
SFC47979.1
Hypothetical protein.
  
     0.599
SFD03455.1
Protein of unknown function.
 
     0.598
SFD03258.1
Catechol 2,3-dioxygenase.
 
     0.564
SFC38416.1
DNA-binding transcriptional regulator, MerR family.
 
     0.533
SFC86626.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.506
Your Current Organism:
Clostridium uliginosum
NCBI taxonomy Id: 119641
Other names: ATCC BAA-53, C. uliginosum, Clostridium uliginosum Matthies et al. 2001, DSM 12992, strain CK55
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.