STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD35857.1Predicted site-specific integrase-resolvase. (206 aa)    
Predicted Functional Partners:
SFD35879.1
Putative transposase.
 
  
 0.949
SFC60032.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.888
SFD45219.1
Putative transposase.
 
  
 0.787
SFD13960.1
Putative transposase.
 
  
 0.784
SFD14986.1
Transposase, IS605 OrfB family, central region.
 
  
 0.668
SFD35899.1
Arginine/lysine/ornithine decarboxylase.
       0.465
SFD38815.1
Conserved hypothetical protein (putative transposase or invertase).
  
     0.435
Your Current Organism:
Clostridium uliginosum
NCBI taxonomy Id: 119641
Other names: ATCC BAA-53, C. uliginosum, Clostridium uliginosum Matthies et al. 2001, DSM 12992, strain CK55
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.