STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IA57_02080Branched-chain amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (351 aa)    
Predicted Functional Partners:
IA57_02650
Aspartate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.922
IA57_02075
Tungsten formylmethanofuran dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.819
IA57_10715
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.777
IA57_10035
hydroxymethylglutaryl-CoA lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.754
IA57_02535
Cytochrome C4; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.679
IA57_02085
2-oxoglutarate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.666
IA57_09985
Leucine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.644
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
     
 0.644
IA57_11985
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.610
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
   
 0.489
Your Current Organism:
Mangrovimonas yunxiaonensis
NCBI taxonomy Id: 1197477
Other names: CGMCC 1.12280, LMG 27142, LMG:27142, M. yunxiaonensis, Mangrovimonas yunxiaonensis Li et al. 2013 emend. Hameed et al. 2015, Meridianimaribacter sp. LY, strain LY01, strain LYYY01
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