STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IA57_05520Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family. (535 aa)    
Predicted Functional Partners:
IA57_11425
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.844
IA57_05525
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.789
IA57_11160
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.548
secY
Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.520
IA57_00575
Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.499
IA57_00005
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.466
IA57_00010
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.466
IA57_00185
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.466
IA57_00415
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.466
IA57_01075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.466
Your Current Organism:
Mangrovimonas yunxiaonensis
NCBI taxonomy Id: 1197477
Other names: CGMCC 1.12280, LMG 27142, LMG:27142, M. yunxiaonensis, Mangrovimonas yunxiaonensis Li et al. 2013 emend. Hameed et al. 2015, Meridianimaribacter sp. LY, strain LY01, strain LYYY01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.